WebUser Guide. Chromap is an ultrafast method for aligning and preprocessing high throughput chromatin profiles. Typical use cases include: (1) trimming sequencing adapters, … WebThe package provide multiple features like visualizing multiple sets, chromosome heat-maps, group annotations, adding hyperlinks, and labelling. The plots can be saved as HTML documents that can be customized and shared easily. In addition, you can include them in R Markdown or in R 'Shiny' applications. copied from cf-staging / r-chromomap Conda
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WebJan 23, 2024 · Abstract Summary chromoMap is an R package for constructing interactive visualizations of chromosomes/chromosomal regions, and mapping of chromosomal elements (like genes) onto them, of any living organism. The package takes separate tab-delimited files (BED like) to specify the genomic co-ordinates of the chromosomes and … WebJan 11, 2024 · ChromoMap can also integrate multi-omics data (genomics, transcriptomics and epigenomics) in relation to their occurrence across chromosomes. ChromoMap … can stress make body temp rise
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WebChromoMap: an R package for interactive visualization of multi-omics data and annotation of chromosomes Published in: BMC Bioinformatics, January 2024 DOI: 10.1186/s12859 … WebMar 18, 2024 · The chromoMap package contains the following man pages: chromoMap chromoMap-shiny. rdrr.io Find an R package R language docs Run R in your browser. chromoMap Interactive Genomic Visualization of Biological Data. Package index. Search the chromoMap package. Vignettes. chromoMap v0.4.1 Documentation (R package) ... WebFeb 7, 2024 · Provides interactive, configurable and elegant graphics visualization of the chromosomes or chromosome regions of any living organism allowing users to map chromosome elements (like genes, SNPs etc.) on the chromosome plot. It introduces a special plot viz. the "chromosome heatmap" that, in addition to mapping elements, can … can stress make copd worse